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rpoB is a bacterial gene encoding the beta subunit of RNA polymerase. Mutations in rpoB cause rifampicin resistance and are central to the rapid diagnosis of tuberculosis.
rpoB is a bacterial gene encoding the beta subunit of RNA polymerase. Mutations in rpoB cause rifampicin resistance and are central to the rapid diagnosis of tuberculosis.
The rpoB gene encodes the beta subunit of the bacterial RNA polymerase, a key enzyme responsible for transcription – the process by which genetic information in DNA is copied into RNA. This gene is present in virtually all bacteria and is highly conserved, meaning its sequence is similar across many bacterial species. In a clinical context, rpoB is most relevant in relation to Mycobacterium tuberculosis, the causative agent of tuberculosis (TB).
Mutations in the rpoB gene alter the structure of the RNA polymerase enzyme. These structural changes prevent the antibiotic rifampicin (also known as rifampin) from binding to its target molecule. Rifampicin is a cornerstone of standard TB therapy and normally inhibits bacterial RNA polymerase. When an rpoB mutation is present, this inhibition is blocked, rendering the bacterium resistant.
More than 95% of all rifampicin-resistant Mycobacterium tuberculosis strains carry mutations within the so-called rifampicin resistance-determining region (RRDR, codons 507–533) of the rpoB gene. Because rifampicin resistance frequently co-occurs with resistance to isoniazid, rpoB resistance serves as a surrogate marker for multidrug-resistant tuberculosis (MDR-TB).
Detection of rpoB mutations plays a major role in the rapid diagnosis of rifampicin-resistant tuberculosis. Modern molecular diagnostic techniques allow direct detection from clinical samples, eliminating the need for time-consuming bacterial culture.
The detection of an rpoB mutation has direct consequences for the management of tuberculosis:
Beyond its clinical use in TB diagnostics, the rpoB gene also serves as a phylogenetic marker in microbiome research. Because it is present in nearly all bacteria and shows lower rates of horizontal gene transfer compared to other genes, rpoB is well suited for the identification and classification of bacterial species.
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